Scaffold Ga0190264

Basic Information
Taxon OID	3300019377 Open in IMG/M
Scaffold ID	Ga0190264_10007200 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019377 Open in IMG/M

Scaffold ID

Ga0190264_10007200 Open in IMG/M

Source Dataset Name

Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3082
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3082

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	38.0262	Long. (^o)	-109.5407	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Utah

Coordinates

Lat. (^o)

38.0262

Long. (^o)

-109.5407

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F079764	Metagenome / Metatranscriptome	115	Y
F090582	Metagenome / Metatranscriptome	108	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0190264_100072001	F090582	N/A	KGTAKYDGRENLDMHRSWRVTVETPTSGLMGGILFAPKMSGFLVEGETQLHGSPPAPFPASIQVLNNEGVCIRTRTEIAAPQNEVAAVGAAANEAEARRIVGLVSGTWRNPSGGTCQTAFFKSGMRTKSKRDEEALTGTITNAGLTIPGHLIIVGAREGQIVDPDTDRPIFLFDSPSGEKLHLVAIGGPAASWPEVTLELCPGSRG
Ga0190264_100072002	F079764	GGAGG	MRSVSLIPAFVALIMSSTAFAQVWEEYVNRENFFQINLPGEPTMTEVPYRTVKGTALTARVFTATAAPSSITAGTYRVTVVDYSNAINEMVDAIEQARKAISAKGTVKYDGVNNLDGHREWRLTVETPNSRIVAGILLAANNRLYFTEGETPLAVPPAAQFQASMQVLNNEGVRIRTPTRIAAPEVDPGAGVGKEAQAQEIARVVAAVSGTWRNPSGGTCQAAYFKSGARGKAPRGEEAIAGTVTNSGTTISGQLIVVGAREGQFVDANDQPIFLFENRPGDKLTFTPIGGPALSWPEVTLELCPGSRG
Ga0190264_100072003	F079764	GAGG	MRAVSLIPAIVALFLSTAASAQVWEEYVNRDNFFQVNMPGEPTMTEVPYRTVKGTNLTARVFTATADPRSITAGTYRVTVVDYSSAQGELGDAIEQARQVMLAKGMVKYDDINNLDFHRSRRITVENANARILGEILISATNRLYIVEGETPLNVPPAAQFQASLQILNNEGVRIRERTEIAAPPNEIRPVGERANNEEATRVAAAISGTWRNPNGGTCQTAYFKSGERVKTQRMEEAIAGTVTNQGMTIPGHLVIVGPREGQFINPMNDRAVFLFDANTANKLNFVAIGAPALGWPEVTLERCSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190264_10007200

Overview

Ecosystem & Geography

Associated Families

Sequences