NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0173482_10032367

Scaffold Ga0173482_10032367


Overview

Basic Information
Taxon OID3300019361 Open in IMG/M
Scaffold IDGa0173482_10032367 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1590
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002378Metagenome / Metatranscriptome566Y
F018388Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0173482_100323672F002378AGGAGGMRKYLVAAVLIGAFVAPAFALESGPYYVGFDTSAHTCSVVTEMKPGMKNMGQFKTQDEAEKAMAGMKECKGAM
Ga0173482_100323673F018388GAGGMIGRALALAALVGSAGYVVPLTHAKPIAVSHELLQQASIITPEGVTVDPNNKEELKKYDNRHDLSELADTLRKEFGVTASHLTQLIACTGTLVCSVPSADGKRIDTYRASGNVALQPNILVTVKHAFQDLDTGQLLPIDKCRFHNWKHPNDEIAIIIDDPAQLPPIATSMSKTPELKRQDLTAVRLAHPVESCQ
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