| Basic Information | |
|---|---|
| Taxon OID | 3300019361 Open in IMG/M |
| Scaffold ID | Ga0173482_10002747 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3813 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008101 | Metagenome / Metatranscriptome | 339 | Y |
| F039294 | Metagenome / Metatranscriptome | 164 | N |
| F085536 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0173482_100027472 | F039294 | GGAG | MTGTIGYAQPFRAIGQALETLNLQVFELEPTGEDFLIRGHLPNPVVDVSADGLSPASLNTVWGNLAPLSSENRPEQTEPTVPLLSPIELQYTNKDIDRLEQEGRANRTNPNRIPEYSSLSQILRCVGAYLVQKRARLIKLWRDSDSVSLEYQTSLGNMLKDTLVVGELYDLWVRMYMQRAERSTTL |
| Ga0173482_100027473 | F085536 | N/A | MIDEFRYTVVLRPIGQMLEGLRIESFSVKPDSVGFVVRDKTRNRAQLTPREKAFLGELHWMHGAALDKEDALRLAAGVFEWHVTAIDLERFEAAGRALRQEHSGTPDSHSVSQILRVIGNILDQKRQELYCISKDAEAVTIEYLLNNGKVAREEYRVPVLYDQWVRMYKRRANHEAGEDSAT |
| Ga0173482_100027474 | F008101 | N/A | MPPNLNFAQLLRPVGQMLEPLQLESFSLKLEEGNVSVQAQKRAERSAPAAEVSLRVTWQLFRRKKSDSASEPQPSSGLLELHYTPEDIARMETEGQSRRQGAGGRPEAHALSQVLRAVGAFVDQKQGRLSSVKMAGQDITIEYESALKQNVTEKFTVATLYDYWVKMYLKRRQRS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |