NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179951_1120580

Scaffold Ga0179951_1120580


Overview

Basic Information
Taxon OID3300019209 Open in IMG/M
Scaffold IDGa0179951_1120580 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNHW3_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)805
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan: Saitama Prefecture
CoordinatesLat. (o)35.92Long. (o)139.63Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000734Metagenome / Metatranscriptome915Y
F052615Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0179951_11205801F000734AGGAMAGPVKTFRNVGGVKNGTADLWTKGDLRDKRRDPWLWANALSKAVADPELAG
Ga0179951_11205802F052615GAGGVALGQRAVKSSGRPGASWLRRGEEGIDVSWPGSQAGGATTGPSELKSLTQQFSGRKALDGPAMRPETPLAVENSVGKLAAKSAPNASAGKRAWRTPI

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