| Basic Information | |
|---|---|
| Taxon OID | 3300019039 Open in IMG/M |
| Scaffold ID | Ga0193123_10029692 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001286 (ERX1782333-ERR1712137) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1719 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea: TARA_011 | |||||||
| Coordinates | Lat. (o) | 41.6686 | Long. (o) | 2.7996 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000023 | Metagenome / Metatranscriptome | 5736 | Y |
| F001313 | Metatranscriptome | 725 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193123_100296921 | F000023 | N/A | DIQASLAGAERVLATCAVEQVDRKLRDFEDRVVGLEHRIDGGDFGVDDNGLLPTRKAGSSDAQILKKVSTRLQDFEAQITAQLSNIQGDFDKKLSHVNRGASSMKPLDAVGASAGLDTMAEDLDQLKYDVGELKDLLSNNKGETNHIRRIVLACERDM |
| Ga0193123_100296922 | F001313 | AGGA | MDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAIVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHDVDIQKNSDAARKLEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCTASLTKGVVKFAQVVGVFPGPKFDDAEGVDQSEADVELLGWEECAENMSFRVDKAWRQRCSQRFRNVLDM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |