NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192982_10067580

Scaffold Ga0192982_10067580


Overview

Basic Information
Taxon OID3300019021 Open in IMG/M
Scaffold IDGa0192982_10067580 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001034 (ERX1782268-ERR1711957)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1119
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_085
CoordinatesLat. (o)-62.21Long. (o)-49.2245Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068873Metagenome / Metatranscriptome124N
F099354Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0192982_100675801F068873GGAGGLDTADTGGSFNGGDHDVTLISPVWSPGVSDDVVRLSVLVSISDSGDGVIELGSASGGVENTTGVTLESHLVGFDGNRDWSLGDSSKELSGRVGLDGVDFRDESFWASSLLARSRVSGSGGVWVFSLGGLSVGGNVVHSLGLPSTSASVAGGVARDELLFGKAHKVSTLLDELSGLHGGGSRESPA
Ga0192982_100675802F099354N/ALVLDGVNGSEGSPVLGGWDSFGGEDGWLGSGLVSFESENLFVLLLGPGGHEVGSDGEGVCWVSVDSGEFGNLGVEDFLSEHVFFLGSIGDTVSSDVLEELGGGIDVFVFAEIGESEGEGGFAERVHLFF
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