NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192955_10017452

Scaffold Ga0192955_10017452


Overview

Basic Information
Taxon OID3300018930 Open in IMG/M
Scaffold IDGa0192955_10017452 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001396 (ERX1782254-ERR1712008)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1328
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_082
CoordinatesLat. (o)-47.2007Long. (o)-57.9446Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020094Metagenome / Metatranscriptome226Y
F064770Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0192955_100174521F064770N/ATWANFFFFFHGTSLNSSSWIKIEQAFVNHQLKYFRIFNKLMIHILKNSIFKNLTSLINGPIILLNTNNVELTLKKLKSISPLITLIGLRINYKVYSKEQIQNLKKMSYLENLLIFHRTMGNSIKTPY
Ga0192955_100174524F020094N/AMVLFIFTNLPHLKMKTNYLISCIYVFFFNNQKLISYILNINLSSTNTVINVNDIEGNPKFFYSAGMFDLQKNQKIRQPKAIILILRALLLKSKFFRTKPVAVHFNNIFFNYQSYIFKKLKRKIFTKFVASYTCRSHNGCRLKKKKRIKIRTRTRKL
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