NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10050679

Scaffold Ga0066669_10050679


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10050679 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2619
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000936Metagenome / Metatranscriptome828Y
F004506Metagenome / Metatranscriptome435Y
F032846Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0066669_100506793F032846AGGAGGMSSQVELCEHHAKDCLQAAEKTEDALAREMLLRHALEWMRDGLAASKHSKLCAVCGRKAAPGSSLVH
Ga0066669_100506794F000936AGTAGVKLPARVACKSMNRVQERKHHLALANRQIAELTVQIVRQRVSVKHARDTGQRSEMSESLLDALEGSLRLFEKHRIFLLSSVNRPK
Ga0066669_100506795F004506GGAGMAGMCTIIKASLVASALMLLESCTGYLTSYQTPGVEEHDCECVQDTTIYRSWLDCRDYGRVKSRAY
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