NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190274_10005504

Scaffold Ga0190274_10005504


Overview

Basic Information
Taxon OID3300018476 Open in IMG/M
Scaffold IDGa0190274_10005504 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7608
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.6356Long. (o)-110.571Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008274Metagenome / Metatranscriptome336Y
F010871Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0190274_100055042F010871AGGAGGMDATELCRVLLVGSVAAADVPELGQPETRDEVRRRLGEAGCELVYSSASERWLARLDGAVPALEGHDPVLALGTAELAVLATCWLHLRFLPGEARSGDSQPEPDQGWLDPDDLSELLGARLDGGLPGVLERLGRAGYLTLREGRVEAGPLLDTLDEPGAAEQARALLARHQRLTHLRRRAAELDGGDNRNRNGDGRAQGDAAD
Ga0190274_100055045F008274GGAGGVSNQFDHLDDSEREWLRASRRSAARRSWLLIGILVVIALFLAWLTVDGLPRLTREPTTTTNADQRAIADGEQALSDWGEFAVTNDLETVKDTFWANGPQYQQLEREAKQRKEPIGPPPYKMTMTDVKVLKPRDDQRVLRGRVQMTRPGEEPQSFNWDVWLQVDPAAGGRWRLWTVRDTAGGS
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