| Basic Information | |
|---|---|
| Taxon OID | 3300018469 Open in IMG/M |
| Scaffold ID | Ga0190270_11195170 Open in IMG/M |
| Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 798 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Utah | |||||||
| Coordinates | Lat. (o) | 41.136 | Long. (o) | -111.9047 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021725 | Metagenome / Metatranscriptome | 217 | N |
| F073508 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190270_111951701 | F073508 | AGGAGG | MFIGQVEDTGVIEPLVFPRVVAADEPMTPQTEPDGPVLEPAAAR |
| Ga0190270_111951702 | F021725 | GGCGG | MLGPPDGIVPLVGYREWSIRTEPNGRPPRLLSLFHPTMWPHDQPFSAVCLRPMTWPERSTTPIHTAVPDESCRCGIYAFRRPEFESLNGAAGPKVRGIVFGWGRYVLGTLGWRAQFARLVALLAPDEDPELVGDLAERYRVEMIPHLERIVFLAGRPAT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |