| Basic Information | |
|---|---|
| Taxon OID | 3300018469 Open in IMG/M |
| Scaffold ID | Ga0190270_10374713 Open in IMG/M |
| Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1305 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Utah | |||||||
| Coordinates | Lat. (o) | 41.136 | Long. (o) | -111.9047 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030494 | Metagenome | 185 | Y |
| F035366 | Metagenome | 172 | Y |
| F060113 | Metagenome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190270_103747132 | F060113 | AGG | MIWFFERPGERLQCEIRQSASGSGFELVWTSSDGRIHVEVSNDASELIRRRRALEHWLKLDGWIRPGRVTPVRPPRTQRTRKTDAHFH |
| Ga0190270_103747133 | F030494 | AGG | MERVVPGARDAARRHADLVGTPVFWLTIAVTLCALVPLGLFPRMRAWLGCAVLLMWTCFFTANAVRSRRTHSIISAPVYLLAAALLAGTAWGWVAVDVWMVWLLGAGIIAANLSERFVGRYL |
| Ga0190270_103747134 | F035366 | N/A | MMITNKNDANKAAVLERLNAVRSALEKLPQNAPVARALEQCGRLELAITQFHAEGLRFAAFTLFRMVFAQGTIFTEPVQIATQNLKSALDAAGYPH |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |