NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190270_10100896

Scaffold Ga0190270_10100896


Overview

Basic Information
Taxon OID3300018469 Open in IMG/M
Scaffold IDGa0190270_10100896 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2211
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.136Long. (o)-111.9047Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005802Metagenome390Y
F006363Metagenome / Metatranscriptome375Y
F020437Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0190270_101008962F006363N/AMDLPSNPPVSPAVRITVLLRLASEGFQDAFGARPEWLEAPPVDLAELREVVGVERIGQLREATGLREGEGYAAGGPPGVVRLAAAAHEGVLGLLGVAALPPDVLIEQTDEGPRYHVPDDWFLTTPAGGPRNN
Ga0190270_101008963F005802AGGAGMATDDMSARRRVLLLDVTQAAAEVSRLVHEARDRNLPVEPGVRDGRNALVRWAVFLEEVL
Ga0190270_101008964F020437AGGAGGMTEPHKLTDLVPVDVLTEVTTAIAVLEIQGPAITEALRQLDRATTMAWKAVNMVGVTDEEWELVKGELGIARAWDAAYQLVSTFDLPSMQPSADVTADGP
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