| Basic Information | |
|---|---|
| Taxon OID | 3300018469 Open in IMG/M |
| Scaffold ID | Ga0190270_10000001 Open in IMG/M |
| Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 444653 |
| Total Scaffold Genes | 403 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 262 (65.01%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Utah | |||||||
| Coordinates | Lat. (o) | 41.136 | Long. (o) | -111.9047 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002279 | Metagenome | 575 | Y |
| F066113 | Metagenome / Metatranscriptome | 127 | Y |
| F089128 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190270_10000001143 | F002279 | N/A | MSSPSPLPPPKPDWARLVGDSVKQNGLWHTYTKLLEARRQYGDDLSLRGYVEIIRNSLVRDFLAHPRGLQAVPKLSPDFLTNFDRFDLNAQEGYLVSLIDGRMDVQKLMILSPFDPFNTIFILAKLQHEKAITVPS |
| Ga0190270_10000001282 | F066113 | AGGA | MMAPEFPIRIITDDGECEVIDSPEALMARVDSIDSSDPRVWVRDAYDRTVRLRMNGGMVELLEV |
| Ga0190270_10000001391 | F089128 | N/A | MTIVLNIVLGLIPTLVLGASIAAGIEDDAGHRRVFLLIYGLWAFTLAGWNWLESAHVAWVVLWAIFGAGALILWLIRRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |