NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10088830

Scaffold Ga0066662_10088830


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10088830 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2144
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034863Metagenome / Metatranscriptome173Y
F071041Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100888301F034863N/AVLVGVNVTLQLEVVALTPARVHGDPVKLPAAVPPLVNATVPAGALAVPAADVSLTNPVHVVAWATTIAAGVHVTAVEVVRRLTVTVLLAVGPLPL
Ga0066662_100888304F071041GAGVYVPLAITVPVAVGLNVTVQLDVVALRLAKVQGDPVNEPVAVPPLVNATVPRGADVVPTADVSLTNPVHVMD
Ga0066662_100888305F071041N/AMTVPVLVGVNVTLQLEVVALTDASVQGDPVKLPVAVPPLVNATVPRGADAVPAADASLTNPVQVVD
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Institute for Fundamental Biomedical Research
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