NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10017935

Scaffold Ga0066662_10017935


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10017935 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3888
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F036167Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100179352F022846N/AMPQASPEEVGRELSDLAFGIVEQNWLEQYIGKVVNLTALDQLQLNVTEWELTYLILFAITNGCGTFSAADSERTTAILKAFHSTVLSHIAEQAGQEVADEHKKNLPARYRLYGPAIEGEDTNKPYKTPYRLLGEAAALQILGKPLTDPHDADNFRETIKVIFTEVREATIKIMSFQQAQAIEGKA
Ga0066662_100179353F036167GGAGMRRFTITDIVEGNGQSHPAFTHTATYPVLEVLLPGNGNLPGFLVADDQGRFHLIRMDHCHLGKIEAF
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Institute for Fundamental Biomedical Research
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