| Basic Information | |
|---|---|
| Taxon OID | 3300018433 Open in IMG/M |
| Scaffold ID | Ga0066667_10072730 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2182 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000703 | Metagenome / Metatranscriptome | 928 | Y |
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F018787 | Metagenome / Metatranscriptome | 233 | Y |
| F020633 | Metagenome / Metatranscriptome | 223 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0066667_100727301 | F018787 | GAGG | MGRGAQSNTRQMTDQERANIDALNQQFFGQQQQIGNTLLPQYQSIL |
| Ga0066667_100727302 | F000703 | GAGG | MCRSCSRCFSVSDRGALAQRAKNLWPEGLSYSNKYNHKEMRVREYQDSDLAELRAIHAAQGFDYPLPDLRNPLFVTKLVLSDENVAPPFRAASVPLNEEPASGGAGLKPGPKNGRILGAAFLRLTAEAYLLLDPRAGAPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAKNFGKRIARLGWLRDDAWTPYCKRLES |
| Ga0066667_100727303 | F000781 | N/A | MLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPNTPAPAPSPIASVSVQASNGWFDISIADPSDARPGLFYFAESDTTPAFGAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPIAVAGGGITGPAPQPSSGSGVFPNGVPRGGNGFGIHPGSRIARQTVL |
| Ga0066667_100727306 | F020633 | N/A | MFVEGAGNLSLTSFTDSASVPQTQQPLPLSSPSVKDLELPINVLGERVAFQVSTNQPGAWFRLQKFTPSVRVDPWAPVRGVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |