NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10025779

Scaffold Ga0066667_10025779


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10025779 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3219
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040553Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0066667_100257794F040553N/AVASILILVVPRVAVAVAENDTMTVQVGLHGLLVNVAVTPVGRPDAENVTEDVVPLTRVASMDDDGLVDP
Ga0066667_100257796F040553N/AVAVAEKETVTVQVGSHGLFVKSAVTPVGRPEAEKVTVVDVPLTNVASMEDDELVEP
Ga0066667_100257798F040553N/ALASILTVVVPRVAAAVAENETVTVQVGLHGLLVKVAVTPVGNPEAENVTDAVAPLTSVASIEADELVEP
Ga0066667_100257799F040553GGAVAVIVTVTVPRVAVAVAENETVTVQVGLQGLLVKAAVTPDGSPDAEKVTGVVVPATSVASIEDEELVEP
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