| Basic Information | |
|---|---|
| Taxon OID | 3300018432 Open in IMG/M |
| Scaffold ID | Ga0190275_10041021 Open in IMG/M |
| Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3803 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Montana | |||||||
| Coordinates | Lat. (o) | 45.2639 | Long. (o) | -110.8632 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030494 | Metagenome | 185 | Y |
| F035366 | Metagenome | 172 | Y |
| F060113 | Metagenome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190275_100410214 | F060113 | AGG | VIWFFERPGERLQCEIRQTASGPGFELVWTSSDGRIHVELSNDASELMRRRRALEDWLKLDGWIRPGRVTPVRPFRNERTRKTDLRLH |
| Ga0190275_100410215 | F030494 | AGG | MERIVPGERSAARRQADLVGTPLFWLTITVTLCTLVPLALFPRMRAWLGCAILLMWTCFFTANAVRARRTHSIISAPVYFLAALLLAGTARGFVAVDVWMVWVLGAGIIAANLSERFVGKYL |
| Ga0190275_100410216 | F035366 | N/A | MMITNKNDANKAAVLERLSAVRAAITNEPSSPSRDRALEQCDRLELSITQFHAEGLRFAAFTLLRLVFAQGTAFTEPVHIATQNLKSALETAGYPH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |