| Basic Information | |
|---|---|
| Taxon OID | 3300018432 Open in IMG/M |
| Scaffold ID | Ga0190275_10009089 Open in IMG/M |
| Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7296 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Montana | |||||||
| Coordinates | Lat. (o) | 45.2639 | Long. (o) | -110.8632 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019222 | Metagenome / Metatranscriptome | 231 | Y |
| F028304 | Metagenome / Metatranscriptome | 192 | Y |
| F037922 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190275_100090895 | F037922 | AGGAGG | MQNLPEIETVEQAREALLEMDVGQEITVELDEWIASITKHNDQEFSASFADYETGIINLWNASHILLEHGDYNLYLS |
| Ga0190275_100090896 | F019222 | AGGAG | MSEEELEELEKRGIFVKEYGERTLKVARLYSLLRQECGIEEPWHIMALTVCSFEQMHMKEGWEFVLANKQDIEDVGQLFERSNSPEEFREGLIELKEQDLKEQLERSELDL |
| Ga0190275_100090897 | F028304 | AGTAGG | MARRGESREDISRALAELGWEVRSDDEDPGAVMGGHGKYHLMVSFEGDEPTSVLISYVGRGGEILSRKWPGTEHLPTPRSIVRGLSRGSRDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |