NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10175206

Scaffold Ga0066655_10175206


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10175206 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1301
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001831Metagenome / Metatranscriptome628Y
F011157Metagenome / Metatranscriptome294Y
F033340Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_101752061F033340N/AGSYKASTTRGSTSVGKFYLQDGKLRYRSSRTTGTASLSEDNGKTVLTVKPEDPNYQTGTGEYERVK
Ga0066655_101752063F011157GAGGMNAGAVTLALVLAGCAHAAGVRYTFTPCNPGFQAAVIACFYEAGMGGPVVAYDFYADAGIIEKHWKSRYESCMFRRGYNQIDGPTTWHPKERFNGATGWPWPDDPPKSAWTWVRTAGTGDRHYYDAVCEP
Ga0066655_101752064F001831GGAGGMVFAPWTIHRLWFKRSYGFALFLGACAIANTPQQDLAYARWATCNSTSATLERIDLDGRITFRYTTAGDRQEILQCLAEAGRMGPPLPQPVGVLPAG
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