NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10082376

Scaffold Ga0066655_10082376


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10082376 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002886Metagenome / Metatranscriptome523Y
F005674Metagenome / Metatranscriptome393Y
F018804Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100823761F018804N/ARDVLYDSIASTVGWGWILFWPAIIAAIPAVIVLHVKFRKAPRSYLIPRSGWRFWAAYVGLIWAPVLFGIITLSVGIARRH
Ga0066655_100823762F002886AGGAGGLKSAFRKISRVGSLTGGTRWYLSEDCLLAAKRMMYAVEYRRFYFRDLEYIVIWPRSSWLRRLIIPTVLLAALGFSLWYWVNSIAGEIFTGLALAWMSLELALGPTATSRIRTTGATVELPLVKRTRRARKVLANIDAAVRADRGTVSHPAAPATSPVISQVQLRSEASATESIAPATQTNGS
Ga0066655_100823764F005674AGGMSEATQAPSFSQRAHLAPARSRGHRLSALEALERGFALFRSTFPREAWRYYIGAAPLVFCFIPIWVLIGQIRISDGLLLLEAALLAGLYLFRVCMIGSYMQRVRRASFGAPISKSAGAGAQATVVARLLVWKIMLSAGALTTLPSVAGASWFYSACQFASLEAQEDGGERHSLTGCLALASQWFGAGLLLFLMLFPLWIAVW
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