NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181559_10555335

Scaffold Ga0181559_10555335


Overview

Basic Information
Taxon OID3300018415 Open in IMG/M
Scaffold IDGa0181559_10555335 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045677Metagenome152N
F048238Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0181559_105553352F045677N/AMKKVETLLPEELVESLSAEAKEKGIHRSELIRERLMQPPNHLGLTTNDFHKALTKVRRRSSYGLDRQQAESLVATVFNELFRSSDGN
Ga0181559_105553353F048238N/AMGTKNVHLHYCQVADEHCPLAITRFTSFDIDDKPLAVEQVTYESNMDYMERQVINALRCNVEVSILTSTPIHEFKRLHHIFKN

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