NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187770_10282598

Scaffold Ga0187770_10282598


Overview

Basic Information
Taxon OID3300018090 Open in IMG/M
Scaffold IDGa0187770_10282598 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1289
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F039911Metagenome / Metatranscriptome162Y
F046782Metagenome150Y
F101012Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0187770_102825981F046782GAGGMNRLTNLALSVGETLFHESRRLLFGIALGAAKQLLGTPQPAGTRDLAFTRAFQKKAVDGALLAGPRTDQEYAKFTLKKGLPTEDRPRTLAVENAPHSVDDFSGVIEEGYGKGEKRLLYTGTGVIKVG
Ga0187770_102825982F005112AGGAGMPLVVKYKLFWAACIATLCGLAFWKNSKSYPGKSKLWRLGKSAIDAGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVSGQVVARMDRRNRKEVAKAA
Ga0187770_102825983F039911AGGAGMKYTIAAVFAVVAAVFAAVAAYFNLRYLTRRDLGFTPVKRYVTKLAKTLLHTEATAAKEAGVVQAS
Ga0187770_102825984F101012N/AALTMTEVVNYSVHGISSPLGVTFALGGTIVNTLMVTFVVPIWCRLSRLESRLS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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