NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187772_10270378

Scaffold Ga0187772_10270378


Overview

Basic Information
Taxon OID3300018085 Open in IMG/M
Scaffold IDGa0187772_10270378 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003398Metagenome / Metatranscriptome489Y
F011319Metagenome / Metatranscriptome292Y
F051011Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0187772_102703782F051011GGAGGMQEMTSFDQVVAILGISPDQYKDSLPLKEWVLRNKDEKYVPPSLLKHWGLLDDGEEAA
Ga0187772_102703783F003398N/AMTSLDKNPSIQQVCTDVKNLGYAAPGRVRLYGEEFEVVSDPFLESDWIAVHVKTKKDATIRVLRLPATVLQSVKGWRTAKVA
Ga0187772_102703785F011319N/AVSPAIDHGTPVVLQENTEISRSFRALAETLAEAAPSDGGPDLVYAQEKAAAKKRAFSRPTLSPIRAGQ
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