NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187772_10000667

Scaffold Ga0187772_10000667


Overview

Basic Information
Taxon OID3300018085 Open in IMG/M
Scaffold IDGa0187772_10000667 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15441
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001869Metagenome / Metatranscriptome624Y
F089720Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0187772_1000066710F001869AGCAGGMRTWLRWSAWICLSLMLWTAAVECTHNHPNQTEASSCSICVAAHSANPTPTSANTSPVFAAVGTQPERDVAPAAQLHFSDLDVRGPPLAL
Ga0187772_100006675F089720N/AMGISGEMWWAKNLLLPGIEDFVTTSHGSLPAAEVCAQIKHFGYAVSQIIRIYGEEFEVLSDPFPSEGGVAIHVRSHRTLQTRVLQLPATVIHRVKERLARAA

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