NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184625_10032851

Scaffold Ga0184625_10032851


Overview

Basic Information
Taxon OID3300018081 Open in IMG/M
Scaffold IDGa0184625_10032851 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2547
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F001935Metagenome / Metatranscriptome615Y

Sequences

Protein IDFamilyRBSSequence
Ga0184625_100328513F000805AGGAGMGMPSGESPQHAQQYYHYLQAHKETMQRADTWHVQWIQLAWLWGFVIALVVVILLWIWQYRSTRQKAGPYPVDSFGGYTTELAGPATLFFVLLTLGLTGWAGVLIVGHLVWGQKF
Ga0184625_100328514F001079AGAAGMVTELVPSAQPYVSWSSASIAVVPAEQWPLVFGSMQALKGHVQEYPGCQKLEAFVEPAGPDYRIHCYTVWDTPEQLEAFLERGYTFERMLDDVAGIQAERPHLMEKIF
Ga0184625_100328515F000280GGAGMAEEQRPARPLAGYRDVGEDVRHSRPQVVRSWVILAFLIVLFFAWTLTVYFLEPGLR
Ga0184625_100328516F001935AGGCGGVYLKHISSLQFLTYASFFAVVVAALFKYVPGRSPPLREQPYSDEELHAHDPKAAKYFLAGGLFLVLGSVHMAVKNFPWVAEYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGLCWLALPRI
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