NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184627_10147385

Scaffold Ga0184627_10147385


Overview

Basic Information
Taxon OID3300018079 Open in IMG/M
Scaffold IDGa0184627_10147385 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1247
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003507Metagenome / Metatranscriptome482Y
F009760Metagenome / Metatranscriptome313Y
F063438Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0184627_101473852F009760AGGAGMRLLRHLQHWLTGQGLHIAVAEFVPETHPVRQWADTLPWAALVAAVDRSFVPRFPTSTARGRAPVSARVLLA
Ga0184627_101473853F003507GGAMYACGIRGVQVDRSQGHFVLPEVLAQFRSRIDAALMDELLALQAAAAMEAGLVSPAHLVVDTFPSEQGSQRVNDAATLYKAKKKSFRSLRTSPSTALPRARR
Ga0184627_101473854F063438N/AMRGFGRQCRGQGKVFVTLVRQTETQLLATGHQVVGLAQAAQAHVQSAAHLATDQRARLDTQLQAALTAHQQITTQSRRLTHGKPLTQCKIVNAYDPT
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