| Basic Information | |
|---|---|
| Taxon OID | 3300018072 Open in IMG/M |
| Scaffold ID | Ga0184635_10051602 Open in IMG/M |
| Source Dataset Name | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1588 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9195 | Long. (o) | -106.9496 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003403 | Metagenome / Metatranscriptome | 489 | Y |
| F044164 | Metagenome / Metatranscriptome | 155 | Y |
| F048602 | Metagenome / Metatranscriptome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0184635_100516021 | F044164 | GGAG | MKDITAPLLAIAFVLYILIALISVEFNPDSTSSAVVSNEERISDVGLRFAFKR |
| Ga0184635_100516023 | F003403 | AGGA | MMKQIDIHGQRVELYSLDKGRTWSSSPQSIVAYGQREKMLRLELQKRFARIDAMQDPDPNNITELEIPMSFIGR |
| Ga0184635_100516024 | F048602 | AGGAG | VTANGESKFSHLLIGLALGVIGGLISAVLARKETRELLRERGRNSLDYLNKQVGKL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |