| Basic Information | |
|---|---|
| Taxon OID | 3300018058 Open in IMG/M |
| Scaffold ID | Ga0187766_10116348 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1635 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium liaoningense | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Colombia: Department of Meta | |||||||
| Coordinates | Lat. (o) | 3.8381 | Long. (o) | -73.3194 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008318 | Metagenome / Metatranscriptome | 335 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187766_101163482 | F008318 | AGG | MTDLALRKRSGHDLWWFSIIAVAFFLMVSPQAMTEDDVFQQAINYVFTGRIDPKNHPEIVDEKSCIVVIPEPSLNRYVRYYLSRIKMDVSRISKKYTGRQVFYELEVEGDDIIVEYLNADKRTVQFGFKTAHIPMPGNIEQTEKALKLIFAEHCKADKPWSPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |