NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187858_10136299

Scaffold Ga0187858_10136299


Overview

Basic Information
Taxon OID3300018057 Open in IMG/M
Scaffold IDGa0187858_10136299 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1645
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003754Metagenome / Metatranscriptome470Y
F064183Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0187858_101362991F003754N/ALYVQQAGKQGFMIVDVTKPEKPSLLKRTAESNQSTTGNLQMLTPDVAIAEAPEKTPTTLTSSNRPTETVRVLDLSDPRNPKTLETFNKVTSLLPDGGHGLIYLTNNEGLWILRYNRPLRLEPAKKKPPCDSESAIMAMPPDCD
Ga0187858_101362994F064183N/AIYLRIKSTDSARAATLSNLLNWIYTDGQQFAVQEGYAELPPPLLEALRKKVKDLQ

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