| Basic Information | |
|---|---|
| Taxon OID | 3300018042 Open in IMG/M |
| Scaffold ID | Ga0187871_10001188 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23127 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (70.59%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001950 | Metagenome / Metatranscriptome | 613 | Y |
| F032295 | Metagenome / Metatranscriptome | 180 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187871_1000118810 | F001950 | AGGAG | MRYINNVSTSYGETTCNVSAIFRPSLSHAPEKLNCDRQKASRLSAIAVCMAFCLAALVLFGVTAFAQTNAFQPNPHAGAGQIFVRSQFGGQIFGFDIDQNGTEGLLSEAKSLANGNVLAAVETFNQATGNIIKVVELTQPTHAQDDFITMGVVGNSVGLVEHENVSRGFVTSRTFNVLNPLSSNMLTGGWTPPIGPQHIIMPGGVSRSQGVPNVAVFAYDNSDNFIPYVFSSNVAENTFGPVVMITDSNNFGSVPPPIAYDSVTNQAVLGGGTGAFGTRPIIGVVDLTAGSFSEFEGIGFGFVNGIAVDSADGIFVTDTEDDATVEFYNLAEQTGFTVVLPGSGEQQIFSGADIEFDPINKVFLVAQPTSSSAPSGSTIYVYDIHGNLQETINGFNFSNTFNVVATYIALHPSQRSGYVDGPDSGVTELQSFTY |
| Ga0187871_1000118814 | F032295 | AGGAG | MFDLDFSPPEELGRPLWRSLLINLADRFAPERLAPLQLSSKPIDVILPAETIEVPWYRTVFTNIGDVISPERLPPLDLESRPVDVGELLADELNHPWWDSLLQNLRDRLAPEKFPPLQLTSQPVPGFGAESTLQILDWSDLIVGPKVFRADAPPPAAVAGVNPVASAAQAREAVPANPTLLAARMQLVRDIGRTSFRRKIWIALAAAEAVFLLVAIFKFQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |