NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181601_10071805

Scaffold Ga0181601_10071805


Overview

Basic Information
Taxon OID3300018041 Open in IMG/M
Scaffold IDGa0181601_10071805 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2337
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008946Metagenome / Metatranscriptome325Y
F027182Metagenome / Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0181601_100718054F027182N/AMANILQQIGQTVKSKLDDKVDKTDAVTDFLKSILGFPEDTVAPSVDTSTNIAARTSDDTGTIMYSSDTYDLYVFYGSDWQIFNNS
Ga0181601_100718056F008946GGAMPLRPRPVIHPLAFQNRTLAVTTAAEAKQNQEKATALEQQVESLESDPFFVTIDGGGPVLEDTDIFDGGSIDA

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