NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187855_10175810

Scaffold Ga0187855_10175810


Overview

Basic Information
Taxon OID3300018038 Open in IMG/M
Scaffold IDGa0187855_10175810 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S190(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016840Metagenome / Metatranscriptome244Y
F028016Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0187855_101758101F028016N/AEQALDELSKMSGTGFDGMLVRLLLRELKSERATPARDGI
Ga0187855_101758103F016840N/ADESLYGKATAFDVPPNFFLTGGSGPGYQKFIVQAIQWGNEHGLRTTVLVSPYPWPANGEGQPVYFRQFTGNTFSSDTEKFVNILAAQNAIPSEWSVDNYEDPYPEDAPAMVPDTVPNTTTAVGLWLARNAPVYAGGENGGVECASGSGAVEREPDGARQ

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