NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187881_10147867

Scaffold Ga0187881_10147867


Overview

Basic Information
Taxon OID3300018024 Open in IMG/M
Scaffold IDGa0187881_10147867 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1026
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0187881_101478671F004301GGAGMTAMQFSLFDVRPAAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVNYNLSIVTMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVRRWIRHLLFVLNAERRDVLSAIADLEP
Ga0187881_101478672F017951GGAGMAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFLSAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
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