NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187872_10057231

Scaffold Ga0187872_10057231


Overview

Basic Information
Taxon OID3300018017 Open in IMG/M
Scaffold IDGa0187872_10057231 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2061
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020737Metagenome222Y
F075904Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0187872_100572311F020737N/ARAEKATLAQVLFEVQRQTQAEIAIPAGAEQEEVVADLGPAPARDVLASLLNGSPYNFIFVGNELSLERVILTRRDSNIF
Ga0187872_100572313F075904N/APLLVVFVVGIYDFSGAFNQKQKIEQAAQEGAIIAGAQPMSDIASSNGNPTSLQAVSTAVFNSLTGSGVLANGACSPPGTASGPVGLTWIYKISGCDSAGDNLVITINRGWVSVSSTPAVVGTVVTVQYPYHWRFNSVIQVLIPGANYAATTQLTESATVHNQM
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Institute for Fundamental Biomedical Research
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