NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187865_1057958

Scaffold Ga0187865_1057958


Overview

Basic Information
Taxon OID3300018004 Open in IMG/M
Scaffold IDGa0187865_1057958 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F016632Metagenome / Metatranscriptome245Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0187865_10579581F016632AGTAGGLTGILETFALVEVGSAIGFLANWRNKVLKTKVNFFRQPHNRPSPFDKVLRGKVGRAVTRQDRLRLQLADGLVNLIRKLVQYEAFRQVVRGLALAHSPMRKALRKKGERPR
Ga0187865_10579582F003859AGGAGMHELNAQKGSRSESASITDYLLPVARLCKSLKLSWHWRRLKWAVAAASEAAQGHEANGVRPGSQEFKTLYNEVAKKLQEYSHESDDPIDTLKAKLPAFCAIERLAHPDPVVPSNRLGLTLGILIAALLGSLGMGALIGLGTGMAHWIAHLFG
Ga0187865_10579583F028392AGGAGGMPNTIAAIHLPEALRNGNSALVKLAGKIDSFSLVLQRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRHFAGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCQECCFFLGEPEAQVSEGTMSQTLEALMPAT
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