NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187868_1003937

Scaffold Ga0187868_1003937


Overview

Basic Information
Taxon OID3300018002 Open in IMG/M
Scaffold IDGa0187868_1003937 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9102
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035603Metagenome171N
F104342Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0187868_100393716F035603N/AMIEEVVDYVYMSRVGITCLNQFGELISFVLDPNESPYTVVVQDGLVLPGLHLRVSHAFVDRYMRWAGLEEPFQVWRWHLDVYPPMGIVPVQYGTYGDANLRGNRIYRSSFEPIGGPQLTDPVLLGMQFAAQNIPTAACTCDLVAERELYFRNSPFLPHPGNFDAKLGILVDYEAVVEQDKTPKQQWVM
Ga0187868_10039377F104342AGGAGMANPLEHTLDKTGRLDDETIRVVESVLCDTHPPINPAVLLLAMRNWYLVHGSGPVLRAFLDWLSQIMNFDRAGDHTPYREGQALFTEKTGIDLTERLAAR
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