NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10016269

Scaffold Ga0181520_10016269


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10016269 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8975
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048199Metagenome148Y
F067324Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100162694F048199AGGAMPDEEFPLPWEHRPFDWIRLSEEQAHHVSCASSRRLDLRSLAGDALFYSLVLEGRSPHIDETARAAIRHYVDLTRLLLAAVPARAEDLNLKLAALTPPDPLVAEHVNLRPMLQAGARADIQRLKLPNPPHWILEWAIT
Ga0181520_100162696F067324GGAMSDDFDDDRFACPPLPRHPKGKRVTIHQHSQRSVVALDGPYGPIRIESSTTVTVEAVEADLPPYRFDDGFAQPSPRRLPKGTKR
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