NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10383940

Scaffold Ga0187781_10383940


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10383940 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077901Metagenome / Metatranscriptome117Y
F084998Metagenome / Metatranscriptome111Y
F085937Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_103839401F084998N/ASAMEALVDSFSDLVEEARERMSPEEFRQAEKELDEIVNRAKARASRGGRRETA
Ga0187781_103839402F085937AGGAGMAGRWRPPKEDRTDAETVRRKRELADKLAFAVEYATEDEFVAAVKKFKPDVGKEELKGWITLFHAARREKRGL
Ga0187781_103839403F077901N/AMAYEVFKRTGTRVENPTISIAPDGRIVMNAAAIRVAREARLTSVLLLWDWATHRLAIKATQRGDKNSYALSIASGHSGSIKAKAFLSYIGWKARKRELVPAAWNEKERMFEAQLPVEQLESERWGVKRPAGSS
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