NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10117802

Scaffold Ga0187781_10117802


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10117802 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1851
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014825Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_101178022F014825AGGAGGMASNRLTIKLTDQQQEQIKSATGKSITELNIDLGATGNLTEKDLDNVSAGAISIYWKD
Ga0187781_101178023F014825AGGAGMAGNRLTIKLTDEQQNQIKSATGRSITELNIDLGATGNLSEKDLENVTGGSITTKSAPIIVD
Ga0187781_101178024F014825AGGAGGMAGNRVTIKLTDDQQTQIKSATGRSIIELNIDLGATGNLSEKELDQLAGGVQKVRESTT
Ga0187781_101178025F014825AGGAGGMAGNRLTIKLTDDQQNQIRVATGKSITELNIDVATTSQLTDKDLDHVSGGPIFIDKGA
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