NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190266_10000979

Scaffold Ga0190266_10000979


Overview

Basic Information
Taxon OID3300017965 Open in IMG/M
Scaffold IDGa0190266_10000979 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5059
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9013Long. (o)-109.5337Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024881Metagenome / Metatranscriptome204Y
F054633Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0190266_100009794F024881N/AVNRAFPWALAAFLALVLVPFAAIGCGGESSASAEAPPTTTTTTEPTCPPALARGWQKLADQIEAAVYCPSWLPAPLVGRIGGQWEGIHSVTKEHSYLVGFIWFQRDAGEVHVNLRGYPGQTAVPTCNGKPCFSGGRGTREVAGKTVDVYTVNRGADTWHVLYAWKEDGALYSVSQHVVPELGLSYSQVVKSLDRIMAGLVKIEPQQS
Ga0190266_100009795F054633N/AVKPKIAALGALVVLAGGLFAVACGSTDHEGHARSLYNAYRTAEDSRTDAEEELRLAFRDIASAAQAQDRDAVLEAAQRGQDAVDKINDLITAELEAAQGLEEIDSVSAHAKQLSDGLRLSRSSLALVGKELAIALDDPFLETRKNDIDDLAKKSADLAVKGESAIRRADHALALALGLEPRLDQMFTTTSG
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