NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181589_10747294

Scaffold Ga0181589_10747294


Overview

Basic Information
Taxon OID3300017964 Open in IMG/M
Scaffold IDGa0181589_10747294 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)610
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003423Metagenome / Metatranscriptome487Y
F074905Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0181589_107472941F074905GGAGGMAEISLTGNAIYSQNINNFSGELFRVGGQRTPFLSATG
Ga0181589_107472942F003423N/AEEFDAPQEHGVKQMRETIDRKDETIKKLEAELASFKDKEINNVFGKLGLSTDKGFGKALKQVYDGPVDAESIAQFAKDEYGFEPTGQVVQEITQPEPQQMVQDDARARVAALDANSVSDVPLDANDELVAALKNASVKDSLRAKLNYMDKNK

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