| Basic Information | |
|---|---|
| Taxon OID | 3300017959 Open in IMG/M |
| Scaffold ID | Ga0187779_10000148 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 52649 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (84.31%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Colombia: Department of Meta | |||||||
| Coordinates | Lat. (o) | 3.8381 | Long. (o) | -73.3194 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001195 | Metagenome / Metatranscriptome | 750 | Y |
| F029311 | Metagenome | 188 | Y |
| F079500 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187779_100001485 | F029311 | GAGG | MPLLILAIASFLLFPLILVLLCIAHVLESRAIRQNRTPTSARAPLLSIAEAFDPVYSVLWDAPIAALELIDSAGPAGIPVARLRPIYAAAAAHFPEIYEGCSFVHWLQFLEKTRLISWQGYRAVLTPDGHAFLRFRFVTDAMVEA |
| Ga0187779_1000014851 | F001195 | GGAGG | VSKAGLTRTNLLLEVGKVRRLRKVLQSRSNSEAVRLVIDERLAVEVGLQALRNLQKLGGLADISVAL |
| Ga0187779_100001488 | F079500 | GGAGG | MKVPLHFRRAGPGHIRGHDFHTLFSFVASFVLAVLAVLILTVSAK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |