NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187853_10041544

Scaffold Ga0187853_10041544


Overview

Basic Information
Taxon OID3300017940 Open in IMG/M
Scaffold IDGa0187853_10041544 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2394
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015081Metagenome257Y
F071728Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0187853_100415441F071728N/AMNKPNRADVRQANVRVSGITFESVRLRHDLGSDDLDILIDDPQIGRFALTAAVPSLELLQEGSDWRQVTLDELKEILADDGELAEVAEEPQASETAERESFNRLVAEGEHIMNAEIALF
Ga0187853_100415442F015081AGGVHDYYSGEEEISVEDLIEEQRSLARSPNLIGRVVGSLCIGAILKKQLMGLPSSAISQLMTDHISCRLNLLAPESVIAEIASKRLDEKYETSLVCPECRAQL
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