NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187854_10153899

Scaffold Ga0187854_10153899


Overview

Basic Information
Taxon OID3300017938 Open in IMG/M
Scaffold IDGa0187854_10153899 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1042
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017952Metagenome / Metatranscriptome237Y
F030325Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0187854_101538992F017952GAGGMACGLRIRNIRAAMIGGALAMVLVWTAAAAAAPQQLNCVLTDTEGKPGSENRPIVVVFDEDAKTLTAKDGANSYSFSKVSISNVCINGAVDSVSLGIDRSSFGIVWQQYGADKVSTEFGQCHSAQSPQ
Ga0187854_101538993F030325AGCAGGMKRELARELKVAGFPMPPYRAGHHFYPHEDDAGWTDAARRHGVTVTHFDLEDRLQDLENGYYCPNLSDLIEACSDSFSRLYILKTIWTAESDNPEQIAMGDSAEEAVSRLWLALNGHQLPDTRPAAQTG
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