NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187877_1001795

Scaffold Ga0187877_1001795


Overview

Basic Information
Taxon OID3300017931 Open in IMG/M
Scaffold IDGa0187877_1001795 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20838
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (59.26%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001107Metagenome / Metatranscriptome776Y
F003428Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0187877_100179518F003428N/AMAESECAACKELRDRETRAHAAWTSFLYRNKNKPKLSERANRKQQKEKMEAYEQAHKARLAHAKTCPICLSNL
Ga0187877_10017958F001107N/AMRLPRPFTAAPRSCASVFRNCSPLFVATGQGHGWAEFSGRALHALAAGILPAMFLLRSTREEIYNILWALVFGFATLNILSLGARRFEQEKVGLNFGETLAVLVVVVSIVLLGWEMLYLFHILPIRLTPR

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