NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1004458

Scaffold Ga0187856_1004458


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1004458 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9308
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005812Metagenome / Metatranscriptome389Y
F010606Metagenome / Metatranscriptome301Y
F079499Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_10044586F079499GGAMAAAHKLSRKPKLKTFHATMLVTRAEQWWVEAETAEQARAILASGEGHHSSLGECVCVELVGMLEGAD
Ga0187856_10044588F005812AGGMTGWRVILGFLIGAVIASVITAGMFLYTGAKVLQANTARELLAEIVAIDSLQEGWLLQGDGSQTAKLSDHPGLPETQTGSGLWLMPVEIRSILDEAQWNPPSDAGYGFIHGRRVWIIRNQILPDAPLSYSGIKQEHFPELISSDGRQELCAWIERVQIAYNGGTLTDRGLAPLRLYLVPLAQEDRVNALGIELSRDARNFLAEIRARWGKALFAD
Ga0187856_10044589F010606N/AMSGKYLGMPAVLAVIALLLLASPSRAEDRVPVPAACRELAERAGIPLTLTPAEAERAIAYIRVMVSDDPAVARCRLALRNH
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