NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187818_10036303

Scaffold Ga0187818_10036303


Overview

Basic Information
Taxon OID3300017823 Open in IMG/M
Scaffold IDGa0187818_10036303 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000072Metagenome / Metatranscriptome2651Y
F000540Metagenome / Metatranscriptome1043Y
F016565Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0187818_100363033F000540GGAMAKKRAANLLPKLTEAEQDLLSHIQHGYQLETDSLGGNPVLRHLKDNEEIRPLSGNRNTIKAMEQRGLISPGKGPDPLTIVWRVKKKAK
Ga0187818_100363034F000072N/AMDAEQTIAEIEWLERIFAVQDARPLSANDLSAANRRHDEMLAHSPWFRLWQDFGVCCRAESPMFRLGERES
Ga0187818_100363035F016565GAGGMMTTPASAIKDEVRVLIDVQIEIFGQPTPLTPSQLREFHDRSETIRVLCLELNRIGARSVTERRTARAS
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