NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136617_10320165

Scaffold Ga0136617_10320165


Overview

Basic Information
Taxon OID3300017789 Open in IMG/M
Scaffold IDGa0136617_10320165 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1271
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0586Long. (o)163.6839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004294Metagenome / Metatranscriptome445Y
F006205Metagenome / Metatranscriptome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0136617_103201653F006205GGAGMDDIKKTLEKLREELTVAGKRLSHLAEKGQAELPGAGKKINEEYERLQGLLDNAVDKLKKYRP
Ga0136617_103201654F004294N/AMECWLITSRAEIMRLEFGDEPPPEICLPDKPLSEIEDDAPRRAIQDAPYIIYRRFHLAAESWRLGIVYAVSPPTVGDIQILSAYRAGHESRPRLA

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