Scaffold Ga0136617

Basic Information
Taxon OID	3300017789 Open in IMG/M
Scaffold ID	Ga0136617_10000456 Open in IMG/M
Source Dataset Name	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017789 Open in IMG/M

Scaffold ID

Ga0136617_10000456 Open in IMG/M

Source Dataset Name

Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34018
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

34018

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location Name	Antarctica: Dry Valley
Coordinates	Lat. (^o)	-78.0586	Long. (^o)	163.6839	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Dry Valley

Coordinates

Lat. (^o)

-78.0586

Long. (^o)

163.6839

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011492	Metagenome / Metatranscriptome	290	Y
F018768	Metagenome / Metatranscriptome	233	Y
F023391	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136617_1000045629	F011492	GAG	LLERRARFLQQSLTARFATLDHYAMFGLGKPYKDPFADAKSAGRWFASYPANDPLAIYVDVLAELSKIAARSAQRTPARLEAVFCADAQVETLRKLLTTQYLEHADRSSKIEHQLWSSLFELTQAFQFAYQAFARDAAAHGRNPKWQVLLPELGCRQIFHLTQDIKIRLLRFEQWIPAKWAELHALFTLACSRQIERQQVPLRGSSRTTNIEHEYLGALLLQLMNTGSIAPKQLTWLGGEIDGWSEPLRLTLEPSSITSFYVDLSAREGLRRRKQGPLEGRVLFLDTRPLHSLLMQNIVVLEQKIQGTPTSERTPRRSEHLALLRKLASQVDPEFKPLARRGERAAASGTVDAIVGFAKISGYLREEERDPLPKMESGKSFGGTMELATFGRMRTDGDRRLEMSRRRLAVFGTPGGPWEVKDSSQTGFRLLAPMSVANAVTLGTLTAIRVHGQAAWTLGIVRRMKRMTVDRAEIGMQIIANTLLGVELVEQRKNGNPGYSVEMDATTIEGRSFCGLLLSLGKRASAVTVRSLIVPADEYQPTKRLNLLTAKSGSTIRFGRLLEQQSEWVWTTVEPLHAQTSGASGKESISRSAASE
Ga0136617_100004565	F018768	GGA	MSVITEILDRLSGIEVVKEKLRDTGVRVEQLAERMIEVNRQLQDVDRRLVRIEAFAEIAKTRQAVSRKLPRND
Ga0136617_100004566	F023391	N/A	MTSLQLTQIYLERKQKDALRARAKANGTKVAEEVRRAVDAYLAGISPEDLYLLDEGTRKAERHLSEMADDLDRVNARLDVAFARLDRQRA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136617_10000456

Overview

Ecosystem & Geography

Associated Families

Sequences